Expert Answer:
:
You can use plotyy
to plot two bar charts on different y-axes in the same figure.
x = [1,2,3]; y1 = [1000,2000,3000]; y2 = [0.5,0.3,0.1]; [AX,H1,H2] = plotyy(x, y1, x, y2, 'bar', 'bar'); set(H1, 'FaceColor', [1 0 0], 'BarWidth', 1)
This isn't a stacked bar chart like you had before (one set of data vertically on top of the other) but it doesn't make sense include data on different scales in a stacked bar chart.